A Ferengi missile
A missile was a form of ship-based or planetary weapon employed by several species.
Captain James T. Kirk had to deal with a thermonuclear missile launched by the Ekosians that had targeted the USS Enterprise in 2268. (TOS: "Patterns of Force")
The Ferengi Template:ShipClass marauders of the 24th century were equipped with at least two forward missile launchers.
DaiMon Goss's Ferengi marauder fired a missile at the Barzan wormhole, not taking into account that the weapon would have no effect whatsoever on the wormhole. (TNG: "The Price")
The Kataan probe was launched in a missile in the vicinity of the village Ressik. (TNG: "The Inner Light")
In 2373, the Maquis who had survived the assault on them by the Dominion, including Rebecca Sullivan, faked a supposed missile launch against Cardassia to let Michael Eddington know they were safe on Athos IV. Benjamin Sisko and Martok took this very seriously, as they knew the Dominion would start a war if the weapons hit Cardassian targets. There were also fears they were using the cloaking devices the Klingons had given to the Maquis. Sisko enlisted Eddington's help in disarming the supposed missiles and the former Maquis leader accompanied him to Athos IV, where Sisko discovered the truth. (DS9: "Blaze of Glory")