USS Enterprise (NCC-1701)
| Name | Number | Class | Last known status |
|---|---|---|---|
| Columbus | NCC-1701/2 | Class F shuttlecraft | Active |
| Copernicus | NCC-1701/12 | Unknown | Destroyed |
| Einstein | NCC-1701/6 | Class F shuttlecraft | Destroyed |
| Galileo | NCC-1701/7 | Class F shuttlecraft | Destroyed |
| Galileo | NCC-1701/7 | Class F shuttlecraft | Destroyed |
| Galileo II | NCC-1701/7 | Class F shuttlecraft | Active |
| Unknown | NCC-1701/R6 | Scouter gig | Active |
| Unnamed | NCC-1701/5A | Aquashuttle | Destroyed |
| Unnamed | NCC-1701/4 | Unknown | Active |
| Unnamed | NCC-1701/9 | Class F shuttlecraft | Active |
USS Enterprise (NCC-1701-A)
| Name | Number | Class | Last known status |
|---|---|---|---|
| Copernicus | Shuttlecraft 3 | Unknown | Abandoned |
| Galileo | Shuttlecraft 5 | Unknown | Heavily damaged, possibly salvaged |
USS Enterprise (NCC-1701-D)
| Name | Number | Class | Last known status |
|---|---|---|---|
| Berman | Unknown | Type-6 shuttlecraft | Active |
| Calypso | None | Template:ShipClass captain's yacht | Destroyed |
| Campbell | Unknown | Type-15 shuttlepod | Destroyed |
| Copernicus | Shuttlecraft 03 | Type-7 shuttlecraft | Unknown |
| Curie | Shuttlecraft 03 | Type-6 shuttlecraft | Destroyed |
| El-Baz | Shuttlepod 05 | Type-15 shuttlepod | Active |
| Fermi | Shuttlecraft 09 | Type-6 shuttlecraft | Destroyed |
| Feynman | Shuttlecraft 05 | Type-7 shuttlecraft | Active |
| Galileo | Shuttlecraft 07 | Type-6 shuttlecraft | Active |
| Goddard | Shuttlecraft 15 | Type-6 shuttlecraft | On loan to Montgomery Scott |
| Hawking | Unknown | Type-7 shuttlecraft | Active |
| Hawking | Shuttlecraft 15 | Unknown | Active |
| Indiana Jones | Unknown | Unknown | Unknown |
| Justman | Shuttlecraft 03 | Type-6 shuttlecraft | Active |
| Ley | Shuttlepod 09 | Type-15 shuttlepod | Active |
| Magellan | Shuttlecraft 15 | Type-6 shuttlecraft | Destroyed |
| Onizuka | Shuttlepod 07 | Type-15 shuttlepod | Active |
| Piller | Unknown | Type-6 shuttlecraft | Active |
| Pike | Shuttlepod 12 | Type-15 shuttlepod | Destroyed |
| Sakharov | Shuttlecraft 01 | Type-7 shuttlecraft | Active |
| Voltaire | Shuttlepod 03 | Type-15 shuttlepod | Destroyed |
| Unknown | Shuttlepod 01 | Type-15 shuttlepod | Active |
| Unknown | Shuttlecraft 02 | Type-7 shuttlecraft | Active |
| Unknown | Shuttlecraft 04 | Unknown | Active |
| Unknown | Shuttlecraft 06 | Type-7 shuttlecraft | Active |
| Unknown | Shuttlecraft 13 | Type-7 shuttlecraft | Destroyed |
USS Enterprise (NCC-1701-E)
| Name | Number | Class | Last known status |
|---|---|---|---|
| Argo | None | Unknown | Active |
| Cousteau | None | Sovereign-class captain's yacht | Active |
| A number of shuttles of the same unknown type | |||
USS Voyager (NCC-74656)
| Name | Number | Class | Last known status |
|---|---|---|---|
| Baxial | None | Talaxian shuttle | Active |
| Cochrane | Shuttlecraft 4 | Type-9 shuttlecraft | Destroyed |
| Delta Flyer | None | Delta Flyer | Destroyed |
| Delta Flyer II | None | Delta Flyer | Active |
| Drake | Unknown | Type-8 shuttlecraft | Destroyed |
| Sacajawea | Shuttlecraft 05 | Type-6 shuttlecraft | Active |
| Tereshkova | Shuttlecraft 01 | Type-8 shuttlecraft | Active |
| Unknown | Unknown | Type-8 shuttlecraft | Active |
| None | None | aeroshuttle | Under construction |
Miscellaneous
| Name | Assigned to | Number | Class | Last known status |
|---|---|---|---|---|
| Chaffee | USS Defiant | Shuttlecraft 1 | Type-10 shuttlepod | Active |
| Conrad | Starbase 6 | Unknown | Class F shuttlecraft | Active |
| Cousteau | USS Aries (NCC-45167) | Unknown | Type-15 shuttlepod | Abandoned |
| D'Alison | USS Repulse (NCC-2544) | Shuttlecraft 10 | Type-7 shuttlecraft | Active |
| Dawkins | Unknown | Unknown | Type-9 shuttlecraft | Active |
| Kotoi | USS Liberator (NCC-67016) | Shuttlecraft 07 | Type-7 shuttlecraft | Destroyed |
| Nenebek | Pentarus V (civilian) | NAR-2066 | Unknown | Active |
| SD-103 | Earth Spacedock | NAR-25820 | Unknown | Active |
| Verne | Relay Station 47 | Unknown | Type-6 shuttlecraft | Active |
| None | Nova-class starships | Unknown | Waverider | Active |
| None | San Francisco Fleet Yards | 05 | Travel pod | Active |
| None | Earth Spacedock | 5 | Orbital shuttle | Active |
| None | Earth Spacedock | 6 | Orbital shuttle | Active |
| None | Earth Spacedock | 7 | Orbital shuttle | Active |
| None | NCC-71325 | Unknown | Type-6 shuttlecraft | Active |
| None | USS Defiant (NX-74205) | Shuttle 01 | Type-18 shuttlepod | Active |
| None | Starfleet Command | SC-4 (Alternate timeline) | Unknown | Lost |
| Unknown | Deep Space K-7 | Unknown | Class F shuttlecraft | Active |
| Unknown | USS Farragut (NCC-60597) | Unknown | Unknown | Active |
| Unknown | USS Prometheus (NCC-71201) | Unknown | Type-15 shuttlepod | Destroyed |
| Unknown | USS Honshu (NCC-60205) | Unknown | Type-6 shuttlecraft | Captured |
| Picasso | Starbase 11 | SB11-1201/1 | Class F shuttlecraft | Active |
| Unknown | Starbase 11 | SB11-1201/4 | Class F shuttlecraft | Active |
| da Vinci | Starbase 4 | SB4-0314/2 | Class F shuttlecraft | Active |